J3_3JCD_051
3D structure
- PDB id
- 3JCD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGGU*GCUUG*CG
- Length
- 11 nucleotides
- Bulged bases
- 3JCD|1|a|U|653
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCD_051 not in the Motif Atlas
- Geometric match to J3_1G1X_003
- Geometric discrepancy: 0.3356
- The information below is about J3_1G1X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94652.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3JCD|1|a|C|586
3JCD|1|a|G|587
3JCD|1|a|G|588
3JCD|1|a|U|589
*
3JCD|1|a|G|650
3JCD|1|a|C|651
3JCD|1|a|U|652
3JCD|1|a|U|653
3JCD|1|a|G|654
*
3JCD|1|a|C|754
3JCD|1|a|G|755
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
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