3D structure

PDB id
3JCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
AGAUGG*CGUUUCAAAG*CACCAU
Length
22 nucleotides
Bulged bases
3JCT|1|1|C|1556, 3JCT|1|1|A|1558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JCT|1|1|A|1537
3JCT|1|1|G|1538
3JCT|1|1|A|1539
3JCT|1|1|U|1540
3JCT|1|1|G|1541
3JCT|1|1|G|1542
*
3JCT|1|1|C|1551
3JCT|1|1|G|1552
3JCT|1|1|U|1553
3JCT|1|1|U|1554
3JCT|1|1|U|1555
3JCT|1|1|C|1556
3JCT|1|1|A|1557
3JCT|1|1|A|1558
3JCT|1|1|A|1559
3JCT|1|1|G|1560
*
3JCT|1|1|C|1579
3JCT|1|1|A|1580
3JCT|1|1|C|1581
3JCT|1|1|C|1582
3JCT|1|1|A|1583
3JCT|1|1|U|1584

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain A
60S ribosomal protein L2-A
Chain G
60S ribosomal protein L8-A
Chain N
60S ribosomal protein L15-A
Chain X
60S ribosomal protein L25
Chain j
60S ribosomal protein L37-A
Chain q
Ribosome biogenesis protein NOP53

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