J3_3JCT_022
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CAAUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUUUG
- Length
- 40 nucleotides
- Bulged bases
- 3JCT|1|1|A|3172, 3JCT|1|1|G|3173, 3JCT|1|1|A|3215, 3JCT|1|1|G|3216, 3JCT|1|1|C|3217, 3JCT|1|1|G|3219, 3JCT|1|1|A|3268, 3JCT|1|1|U|3270, 3JCT|1|1|C|3272, 3JCT|1|1|U|3275, 3JCT|1|1|G|3276, 3JCT|1|1|U|3277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCT|1|1|C|3166
3JCT|1|1|A|3167
3JCT|1|1|A|3168
3JCT|1|1|U|3169
3JCT|1|1|A|3170
3JCT|1|1|U|3171
3JCT|1|1|A|3172
3JCT|1|1|G|3173
3JCT|1|1|A|3174
3JCT|1|1|U|3175
3JCT|1|1|G|3176
*
3JCT|1|1|C|3212
3JCT|1|1|A|3213
3JCT|1|1|U|3214
3JCT|1|1|A|3215
3JCT|1|1|G|3216
3JCT|1|1|C|3217
3JCT|1|1|A|3218
3JCT|1|1|G|3219
3JCT|1|1|G|3220
*
3JCT|1|1|C|3265
3JCT|1|1|G|3266
3JCT|1|1|A|3267
3JCT|1|1|A|3268
3JCT|1|1|U|3269
3JCT|1|1|U|3270
3JCT|1|1|G|3271
3JCT|1|1|C|3272
3JCT|1|1|A|3273
3JCT|1|1|A|3274
3JCT|1|1|U|3275
3JCT|1|1|G|3276
3JCT|1|1|U|3277
3JCT|1|1|C|3278
3JCT|1|1|A|3279
3JCT|1|1|U|3280
3JCT|1|1|U|3281
3JCT|1|1|U|3282
3JCT|1|1|U|3283
3JCT|1|1|G|3284
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
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