J3_3JD5_004

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

AGGAGCCUGU*AUGGGCUAC*GGAU

Length

23 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|A|544
3JD5|1|A|G|545
3JD5|1|A|G|546
3JD5|1|A|A|547
3JD5|1|A|G|548
3JD5|1|A|C|549
3JD5|1|A|C|550
3JD5|1|A|U|551
3JD5|1|A|G|552
3JD5|1|A|U|553
*
3JD5|1|A|A|708
3JD5|1|A|U|709
3JD5|1|A|G|710
3JD5|1|A|G|711
3JD5|1|A|G|712
3JD5|1|A|C|713
3JD5|1|A|U|714
3JD5|1|A|A|715
3JD5|1|A|C|716
*
3JD5|1|A|G|775
3JD5|1|A|G|776
3JD5|1|A|A|777
3JD5|1|A|U|778

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain G

28S ribosomal protein S7, mitochondrial

Chain I

28S ribosomal protein S9, mitochondrial