J3_3JD5_005

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAUUC*GAAUCAAGCAC*GGAG

Length

20 nucleotides

Bulged bases

3JD5|1|A|U|719

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|C|716
3JD5|1|A|A|717
3JD5|1|A|U|718
3JD5|1|A|U|719
3JD5|1|A|C|720
*
3JD5|1|A|G|733
3JD5|1|A|A|734
3JD5|1|A|A|735
3JD5|1|A|U|736
3JD5|1|A|C|737
3JD5|1|A|A|738
3JD5|1|A|A|739
3JD5|1|A|G|740
3JD5|1|A|C|741
3JD5|1|A|A|742
3JD5|1|A|C|743
*
3JD5|1|A|G|772
3JD5|1|A|G|773
3JD5|1|A|A|774
3JD5|1|A|G|775

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain G

28S ribosomal protein S7, mitochondrial

Chain g

28S ribosomal protein S29, mitochondrial