J3_3JD5_006
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- UAACUCUUAAUA*UAUUAAUUAGG*CCAAGCUA
- Length
- 31 nucleotides
- Bulged bases
- 3JD5|1|A|U|218, 3JD5|1|A|A|268
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JD5|1|A|U|27
3JD5|1|A|A|28
3JD5|1|A|A|29
3JD5|1|A|C|30
3JD5|1|A|U|31
3JD5|1|A|C|32
3JD5|1|A|U|33
3JD5|1|A|U|34
3JD5|1|A|A|35
3JD5|1|A|A|36
3JD5|1|A|U|37
3JD5|1|A|A|38
*
3JD5|1|A|U|212
3JD5|1|A|A|213
3JD5|1|A|U|214
3JD5|1|A|U|215
3JD5|1|A|A|216
3JD5|1|A|A|217
3JD5|1|A|U|218
3JD5|1|A|U|219
3JD5|1|A|A|220
3JD5|1|A|G|221
3JD5|1|A|G|222
*
3JD5|1|A|C|265
3JD5|1|A|C|266
3JD5|1|A|A|267
3JD5|1|A|A|268
3JD5|1|A|G|269
3JD5|1|A|C|270
3JD5|1|A|U|271
3JD5|1|A|A|272
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain L
- 28S ribosomal protein S12, mitochondrial
- Chain P
- 28S ribosomal protein S16, mitochondrial
- Chain c
- 28S ribosomal protein S25, mitochondrial
- Chain p
- 28S ribosomal protein S18b, mitochondrial
Coloring options: