J3_3JD5_007
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- AAACUUACACAUG*CAGUGACAAAAAU*AGUUAU
- Length
- 32 nucleotides
- Bulged bases
- 3JD5|1|A|C|41, 3JD5|1|A|A|44, 3JD5|1|A|A|179, 3JD5|1|A|A|211
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JD5|1|A|A|38
3JD5|1|A|A|39
3JD5|1|A|A|40
3JD5|1|A|C|41
3JD5|1|A|U|42
3JD5|1|A|U|43
3JD5|1|A|A|44
3JD5|1|A|C|45
3JD5|1|A|A|46
3JD5|1|A|C|47
3JD5|1|A|A|48
3JD5|1|A|U|49
3JD5|1|A|G|50
*
3JD5|1|A|C|169
3JD5|1|A|A|170
3JD5|1|A|G|171
3JD5|1|A|U|172
3JD5|1|A|G|173
3JD5|1|A|A|174
3JD5|1|A|C|175
3JD5|1|A|A|176
3JD5|1|A|A|177
3JD5|1|A|A|178
3JD5|1|A|A|179
3JD5|1|A|A|180
3JD5|1|A|U|181
*
3JD5|1|A|A|207
3JD5|1|A|G|208
3JD5|1|A|U|209
3JD5|1|A|U|210
3JD5|1|A|A|211
3JD5|1|A|U|212
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain L
- 28S ribosomal protein S12, mitochondrial
- Chain P
- 28S ribosomal protein S16, mitochondrial
- Chain c
- 28S ribosomal protein S25, mitochondrial
- Chain d
- 28S ribosomal protein S26, mitochondrial
Coloring options: