J3_3JD5_008
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CAAGCAUCUACACCCCAGUGAGAAUGC*GCUG*CUUGCUUAACCACACCCCACGGGAAACAG
- Length
- 60 nucleotides
- Bulged bases
- 3JD5|1|A|A|53, 3JD5|1|A|C|65, 3JD5|1|A|U|145, 3JD5|1|A|A|147, 3JD5|1|A|C|157, 3JD5|1|A|A|158, 3JD5|1|A|C|166, 3JD5|1|A|A|167
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JD5|1|A|C|51
3JD5|1|A|A|52
3JD5|1|A|A|53
3JD5|1|A|G|54
3JD5|1|A|C|55
3JD5|1|A|A|56
3JD5|1|A|U|57
3JD5|1|A|C|58
3JD5|1|A|U|59
3JD5|1|A|A|60
3JD5|1|A|C|61
3JD5|1|A|A|62
3JD5|1|A|C|63
3JD5|1|A|C|64
3JD5|1|A|C|65
3JD5|1|A|C|66
3JD5|1|A|A|67
3JD5|1|A|G|68
3JD5|1|A|U|69
3JD5|1|A|G|70
3JD5|1|A|A|71
3JD5|1|A|G|72
3JD5|1|A|A|73
3JD5|1|A|A|74
3JD5|1|A|U|75
3JD5|1|A|G|76
3JD5|1|A|C|77
*
3JD5|1|A|G|104
3JD5|1|A|C|105
3JD5|1|A|U|106
3JD5|1|A|G|107
*
3JD5|1|A|C|140
3JD5|1|A|U|141
3JD5|1|A|U|142
3JD5|1|A|G|143
3JD5|1|A|C|144
3JD5|1|A|U|145
3JD5|1|A|U|146
3JD5|1|A|A|147
3JD5|1|A|A|148
3JD5|1|A|C|149
3JD5|1|A|C|150
3JD5|1|A|A|151
3JD5|1|A|C|152
3JD5|1|A|A|153
3JD5|1|A|C|154
3JD5|1|A|C|155
3JD5|1|A|C|156
3JD5|1|A|C|157
3JD5|1|A|A|158
3JD5|1|A|C|159
3JD5|1|A|G|160
3JD5|1|A|G|161
3JD5|1|A|G|162
3JD5|1|A|A|163
3JD5|1|A|A|164
3JD5|1|A|A|165
3JD5|1|A|C|166
3JD5|1|A|A|167
3JD5|1|A|G|168
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain P
- 28S ribosomal protein S16, mitochondrial
- Chain Q
- 28S ribosomal protein S17, mitochondrial
- Chain c
- 28S ribosomal protein S25, mitochondrial
- Chain d
- 28S ribosomal protein S26, mitochondrial
- Chain j
- 28S ribosomal protein S34, mitochondrial
- Chain p
- 28S ribosomal protein S18b, mitochondrial
Coloring options: