Loop J3_3JD5

3D structure

PDB id: 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å

Loop

Sequence: CUAUAAUC*GAUAAACCUCACCAAUUCUUGCUAAUACAG*CCUAUGAAAUGGGAAG
Length: 54 nucleotides
Bulged bases: 3JD5|1|A|U|575, 3JD5|1|A|A|576, 3JD5|1|A|A|578, 3JD5|1|A|U|592, 3JD5|1|A|C|594, 3JD5|1|A|A|599, 3JD5|1|A|C|600, 3JD5|1|A|U|692, 3JD5|1|A|U|694, 3JD5|1|A|A|704
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JD5|1|A|C|555
3JD5|1|A|U|556
3JD5|1|A|A|557
3JD5|1|A|U|558
3JD5|1|A|A|559
3JD5|1|A|A|560
3JD5|1|A|U|561
3JD5|1|A|C|562
*
3JD5|1|A|G|573
3JD5|1|A|A|574
3JD5|1|A|U|575
3JD5|1|A|A|576
3JD5|1|A|A|577
3JD5|1|A|A|578
3JD5|1|A|C|579
3JD5|1|A|C|580
3JD5|1|A|U|581
3JD5|1|A|C|582
3JD5|1|A|A|583
3JD5|1|A|C|584
3JD5|1|A|C|585
3JD5|1|A|A|586
3JD5|1|A|A|587
3JD5|1|A|U|588
3JD5|1|A|U|589
3JD5|1|A|C|590
3JD5|1|A|U|591
3JD5|1|A|U|592
3JD5|1|A|G|593
3JD5|1|A|C|594
3JD5|1|A|U|595
3JD5|1|A|A|596
3JD5|1|A|A|597
3JD5|1|A|U|598
3JD5|1|A|A|599
3JD5|1|A|C|600
3JD5|1|A|A|601
3JD5|1|A|G|602
*
3JD5|1|A|C|690
3JD5|1|A|C|691
3JD5|1|A|U|692
3JD5|1|A|A|693
3JD5|1|A|U|694
3JD5|1|A|G|695
3JD5|1|A|A|696
3JD5|1|A|A|697
3JD5|1|A|A|698
3JD5|1|A|U|699
3JD5|1|A|G|700
3JD5|1|A|G|701
3JD5|1|A|G|702
3JD5|1|A|A|703
3JD5|1|A|A|704
3JD5|1|A|G|705

Current chains

Chain A: 28S ribosomal RNA, mitochondial

Nearby chains

Chain E: 28S ribosomal protein S5, mitochondrial
Chain J: 28S ribosomal protein S10, mitochondrial
Chain N: 28S ribosomal protein S14, mitochondrial
Chain i: 28S ribosomal protein S33, mitochondrial
Chain o: Pentatricopeptide repeat domain-containing protein 3, mitochondrial

J3_3JD5_011