J3_3JYV_001

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUUCUGGC*GCAUG*CUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|C|697
3JYV|1|A|U|698
3JYV|1|A|U|699
3JYV|1|A|C|700
3JYV|1|A|U|701
3JYV|1|A|G|702
3JYV|1|A|G|703
3JYV|1|A|C|704
*
3JYV|1|A|G|797
3JYV|1|A|C|798
3JYV|1|A|A|799
3JYV|1|A|U|800
3JYV|1|A|G|801
*
3JYV|1|A|C|842
3JYV|1|A|U|843
3JYV|1|A|A|844
3JYV|1|A|G|845

Current chains

Chain A

18S rRNA

Nearby chains