J3_3JYV_005
3D structure
- PDB id
- 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 24 nucleotides
- Bulged bases
- 3JYV|1|A|G|1196, 3JYV|1|A|G|1197, 3JYV|1|A|A|1199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JYV|1|A|C|1177
3JYV|1|A|U|1178
3JYV|1|A|A|1179
3JYV|1|A|A|1180
3JYV|1|A|U|1181
3JYV|1|A|U|1182
3JYV|1|A|U|1183
*
3JYV|1|A|G|1194
3JYV|1|A|G|1195
3JYV|1|A|G|1196
3JYV|1|A|G|1197
3JYV|1|A|A|1198
3JYV|1|A|A|1199
3JYV|1|A|A|1200
3JYV|1|A|C|1201
3JYV|1|A|U|1202
3JYV|1|A|C|1203
3JYV|1|A|A|1204
3JYV|1|A|C|1205
*
3JYV|1|A|G|1452
3JYV|1|A|G|1453
3JYV|1|A|C|1454
3JYV|1|A|C|1455
3JYV|1|A|G|1456
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S18
- Chain N
- 40S ribosomal protein S29(A)
- Chain S
- 40S ribosomal protein S15
Coloring options: