J3_3JYV_010

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UCAAAG*CGCAAAU*AGUGACAA

Length

21 nucleotides

Bulged bases

3JYV|1|A|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|U|37
3JYV|1|A|C|38
3JYV|1|A|A|39
3JYV|1|A|A|40
3JYV|1|A|A|41
3JYV|1|A|G|42
*
3JYV|1|A|C|433
3JYV|1|A|G|434
3JYV|1|A|C|435
3JYV|1|A|A|436
3JYV|1|A|A|437
3JYV|1|A|A|438
3JYV|1|A|U|439
*
3JYV|1|A|A|464
3JYV|1|A|G|465
3JYV|1|A|U|466
3JYV|1|A|G|467
3JYV|1|A|A|468
3JYV|1|A|C|469
3JYV|1|A|A|470
3JYV|1|A|A|471

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9(A)

Chain L

40S ribosomal protein S23(A)