J3_3JYV_011

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GACUAGAU*GUACCUUACG*CAAAGUC

Length

25 nucleotides

Bulged bases

3JYV|1|A|A|1090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|G|1034
3JYV|1|A|A|1035
3JYV|1|A|C|1036
3JYV|1|A|U|1037
3JYV|1|A|A|1038
3JYV|1|A|G|1039
3JYV|1|A|A|1040
3JYV|1|A|U|1041
*
3JYV|1|A|G|1071
3JYV|1|A|U|1072
3JYV|1|A|A|1073
3JYV|1|A|C|1074
3JYV|1|A|C|1075
3JYV|1|A|U|1076
3JYV|1|A|U|1077
3JYV|1|A|A|1078
3JYV|1|A|C|1079
3JYV|1|A|G|1080
*
3JYV|1|A|C|1087
3JYV|1|A|A|1088
3JYV|1|A|A|1089
3JYV|1|A|A|1090
3JYV|1|A|G|1091
3JYV|1|A|U|1092
3JYV|1|A|C|1093

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S0(A)

Chain E

40S ribosomal protein S2

Chain H

40S ribosomal protein S22(A)