J3_3JYV_012

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUAG*CUAGUAAG*UUGAUUACG

Length

21 nucleotides

Bulged bases

3JYV|1|A|U|1583, 3JYV|1|A|U|1611

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|C|1158
3JYV|1|A|U|1159
3JYV|1|A|A|1160
3JYV|1|A|G|1161
*
3JYV|1|A|C|1579
3JYV|1|A|U|1580
3JYV|1|A|A|1581
3JYV|1|A|G|1582
3JYV|1|A|U|1583
3JYV|1|A|A|1584
3JYV|1|A|A|1585
3JYV|1|A|G|1586
*
3JYV|1|A|U|1606
3JYV|1|A|U|1607
3JYV|1|A|G|1608
3JYV|1|A|A|1609
3JYV|1|A|U|1610
3JYV|1|A|U|1611
3JYV|1|A|A|1612
3JYV|1|A|C|1613
3JYV|1|A|G|1614

Current chains

Chain A

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S5

Chain I

40S ribosomal protein S16(A)