J3_3JYV_014

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UG*UGUCU*GAUAA

Length

12 nucleotides

Bulged bases

3JYV|1|A|A|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|U|1290
3JYV|1|A|G|1291
*
3JYV|1|A|U|1300
3JYV|1|A|G|1301
3JYV|1|A|U|1302
3JYV|1|A|C|1303
3JYV|1|A|U|1304
*
3JYV|1|A|G|1315
3JYV|1|A|A|1316
3JYV|1|A|U|1317
3JYV|1|A|A|1318
3JYV|1|A|A|1319

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S0(A)

Chain E

40S ribosomal protein S2