J3_3OTO_016

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

CAAG*CUAGUAAU*GUGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3OTO|1|A|C|936
3OTO|1|A|A|937
3OTO|1|A|A|938
3OTO|1|A|G|939
*
3OTO|1|A|C|1344
3OTO|1|A|U|1345
3OTO|1|A|A|1346
3OTO|1|A|G|1347
3OTO|1|A|U|1348
3OTO|1|A|A|1349
3OTO|1|A|A|1350
3OTO|1|A|U|1351
*
3OTO|1|A|G|1371
3OTO|1|A|U|1372
3OTO|1|A|G|1373
3OTO|1|A|A|1374
3OTO|1|A|A|1375
3OTO|1|A|U|1376
3OTO|1|A|A|1377
3OTO|1|A|C|1378
3OTO|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9

Chain U

30S RIBOSOMAL PROTEIN THX