J3_3PIP_016

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

3PIP|1|X|G|514, 3PIP|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIP_016 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.1382

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

3PIP|1|X|G|30
3PIP|1|X|C|31
*
3PIP|1|X|G|485
3PIP|1|X|U|486
3PIP|1|X|G|487
3PIP|1|X|A|488
3PIP|1|X|A|489
3PIP|1|X|A|490
3PIP|1|X|A|491
3PIP|1|X|G|492
3PIP|1|X|A|493
3PIP|1|X|A|494
3PIP|1|X|C|495
*
3PIP|1|X|G|506
3PIP|1|X|A|507
3PIP|1|X|G|508
3PIP|1|X|U|509
3PIP|1|X|G|510
3PIP|1|X|A|511
3PIP|1|X|A|512
3PIP|1|X|A|513
3PIP|1|X|G|514
3PIP|1|X|A|515
3PIP|1|X|G|516
3PIP|1|X|A|517
3PIP|1|X|A|518
3PIP|1|X|C|519
3PIP|1|X|C|520

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24