J3_3PIP_020

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGUGAGCUA*UAGGA*UAACCGAACC

Length

24 nucleotides

Bulged bases

3PIP|1|X|G|699, 3PIP|1|X|A|802, 3PIP|1|X|C|803, 3PIP|1|X|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|694
3PIP|1|X|G|695
3PIP|1|X|U|696
3PIP|1|X|G|697
3PIP|1|X|A|698
3PIP|1|X|G|699
3PIP|1|X|C|700
3PIP|1|X|U|701
3PIP|1|X|A|702
*
3PIP|1|X|U|786
3PIP|1|X|A|787
3PIP|1|X|G|788
3PIP|1|X|G|789
3PIP|1|X|A|790
*
3PIP|1|X|U|800
3PIP|1|X|A|801
3PIP|1|X|A|802
3PIP|1|X|C|803
3PIP|1|X|C|804
3PIP|1|X|G|805
3PIP|1|X|A|806
3PIP|1|X|A|807
3PIP|1|X|C|808
3PIP|1|X|C|809

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22