J3_3PIP_022

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GACAAG*CGCAAACC*GGUGUC

Length

20 nucleotides

Bulged bases

3PIP|1|X|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|1317
3PIP|1|X|A|1318
3PIP|1|X|C|1319
3PIP|1|X|A|1320
3PIP|1|X|A|1321
3PIP|1|X|G|1322
*
3PIP|1|X|C|1621
3PIP|1|X|G|1622
3PIP|1|X|C|1623
3PIP|1|X|A|1624
3PIP|1|X|A|1625
3PIP|1|X|A|1626
3PIP|1|X|C|1627
3PIP|1|X|C|1628
*
3PIP|1|X|G|1635
3PIP|1|X|G|1636
3PIP|1|X|U|1637
3PIP|1|X|G|1638
3PIP|1|X|U|1639
3PIP|1|X|C|1640

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34