J3_3PIP_023

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUG*CUAACC*GGGACCG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIP_023 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1802

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

3PIP|1|X|U|2074
3PIP|1|X|U|2075
3PIP|1|X|G|2076
*
3PIP|1|X|C|2179
3PIP|1|X|U|2180
3PIP|1|X|A|2181
3PIP|1|X|A|2182
3PIP|1|X|C|2183
3PIP|1|X|C|2184
*
3PIP|1|X|G|2201
3PIP|1|X|G|2202
3PIP|1|X|G|2203
3PIP|1|X|A|2204
3PIP|1|X|C|2205
3PIP|1|X|C|2206
3PIP|1|X|G|2207

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28