J3_3PIP_026

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAUCCUGGG*CCCAAGGGUUG*CAUUAAAG

Length

28 nucleotides

Bulged bases

3PIP|1|X|A|2497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|C|2496
3PIP|1|X|A|2497
3PIP|1|X|U|2498
3PIP|1|X|C|2499
3PIP|1|X|C|2500
3PIP|1|X|U|2501
3PIP|1|X|G|2502
3PIP|1|X|G|2503
3PIP|1|X|G|2504
*
3PIP|1|X|C|2517
3PIP|1|X|C|2518
3PIP|1|X|C|2519
3PIP|1|X|A|2520
3PIP|1|X|A|2521
3PIP|1|X|G|2522
3PIP|1|X|G|2523
3PIP|1|X|G|2524
3PIP|1|X|U|2525
3PIP|1|X|U|2526
3PIP|1|X|G|2527
*
3PIP|1|X|C|2539
3PIP|1|X|A|2540
3PIP|1|X|U|2541
3PIP|1|X|U|2542
3PIP|1|X|A|2543
3PIP|1|X|A|2544
3PIP|1|X|A|2545
3PIP|1|X|G|2546

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14