J3_3PIP_035
3D structure
- PDB id
- 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CCCAUAGCAC*GCAGCGC*GUCAG
- Length
- 22 nucleotides
- Bulged bases
- 3PIP|1|Y|C|14, 3PIP|1|Y|A|15, 3PIP|1|Y|U|16
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3PIP|1|Y|C|12
3PIP|1|Y|C|13
3PIP|1|Y|C|14
3PIP|1|Y|A|15
3PIP|1|Y|U|16
3PIP|1|Y|A|17
3PIP|1|Y|G|18
3PIP|1|Y|C|19
3PIP|1|Y|A|20
3PIP|1|Y|C|21
*
3PIP|1|Y|G|66
3PIP|1|Y|C|67
3PIP|1|Y|A|68
3PIP|1|Y|G|69
3PIP|1|Y|C|70
3PIP|1|Y|G|71
3PIP|1|Y|C|72
*
3PIP|1|Y|G|109
3PIP|1|Y|U|110
3PIP|1|Y|C|111
3PIP|1|Y|A|112
3PIP|1|Y|G|113
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: