J3_3T1H_004

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

3T1H|1|A|A|952, 3T1H|1|A|G|953, 3T1H|1|A|A|955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3T1H_004 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0785

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3T1H|1|A|U|932
3T1H|1|A|U|933
3T1H|1|A|U|934
3T1H|1|A|A|935
3T1H|1|A|A|936
3T1H|1|A|U|937
3T1H|1|A|U|938
3T1H|1|A|C|939
*
3T1H|1|A|G|950
3T1H|1|A|A|951
3T1H|1|A|A|952
3T1H|1|A|G|953
3T1H|1|A|A|954
3T1H|1|A|A|955
3T1H|1|A|C|956
3T1H|1|A|C|957
3T1H|1|A|U|958
3T1H|1|A|U|959
3T1H|1|A|A|960
3T1H|1|A|C|961
*
3T1H|1|A|G|1202
3T1H|1|A|G|1203
3T1H|1|A|C|1204
3T1H|1|A|G|1205
3T1H|1|A|A|1206

Current chains

Chain A

16s rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19