J3_3T1Y_002
3D structure
- PDB id
- 3T1Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3T1Y_002 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0629
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
3T1Y|1|A|C|913
3T1Y|1|A|A|914
3T1Y|1|A|A|915
3T1Y|1|A|G|916
*
3T1Y|1|A|C|1325
3T1Y|1|A|U|1326
3T1Y|1|A|A|1327
3T1Y|1|A|G|1328
3T1Y|1|A|U|1329
3T1Y|1|A|A|1330
3T1Y|1|A|A|1331
*
3T1Y|1|A|U|1354
3T1Y|1|A|G|1355
3T1Y|1|A|A|1356
3T1Y|1|A|A|1357
3T1Y|1|A|U|1358
3T1Y|1|A|A|1359
3T1Y|1|A|C|1360
3T1Y|1|A|G|1361
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
Coloring options: