J3_3T1Y_004

3D structure

PDB id

3T1Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

3T1Y|1|A|A|952, 3T1Y|1|A|G|953, 3T1Y|1|A|A|955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3T1Y_004 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0511

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3T1Y|1|A|U|932
3T1Y|1|A|U|933
3T1Y|1|A|U|934
3T1Y|1|A|A|935
3T1Y|1|A|A|936
3T1Y|1|A|U|937
3T1Y|1|A|U|938
3T1Y|1|A|C|939
*
3T1Y|1|A|G|950
3T1Y|1|A|A|951
3T1Y|1|A|A|952
3T1Y|1|A|G|953
3T1Y|1|A|A|954
3T1Y|1|A|A|955
3T1Y|1|A|C|956
3T1Y|1|A|C|957
3T1Y|1|A|U|958
3T1Y|1|A|U|959
3T1Y|1|A|A|960
3T1Y|1|A|C|961
*
3T1Y|1|A|G|1202
3T1Y|1|A|G|1203
3T1Y|1|A|C|1204
3T1Y|1|A|G|1205
3T1Y|1|A|A|1206

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19

Chain X

tRNA ASL human Lys3