J3_3T1Y_017

3D structure

PDB id

3T1Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAACCC*GGGGUGCCCC*GGGGAGCCC

Length

27 nucleotides

Bulged bases

3T1Y|1|A|C|984, 3T1Y|1|A|G|1002, 3T1Y|1|A|U|1003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3T1Y|1|A|G|979
3T1Y|1|A|G|980
3T1Y|1|A|G|981
3T1Y|1|A|A|982
3T1Y|1|A|A|983
3T1Y|1|A|C|984
3T1Y|1|A|C|985
3T1Y|1|A|C|986
*
3T1Y|1|A|G|999
3T1Y|1|A|G|1000
3T1Y|1|A|G|1001
3T1Y|1|A|G|1002
3T1Y|1|A|U|1003
3T1Y|1|A|G|1004
3T1Y|1|A|C|1005
3T1Y|1|A|C|1006
3T1Y|1|A|C|1007
3T1Y|1|A|C|1008
*
3T1Y|1|A|G|1013
3T1Y|1|A|G|1014
3T1Y|1|A|G|1015
3T1Y|1|A|G|1016
3T1Y|1|A|A|1017
3T1Y|1|A|G|1018
3T1Y|1|A|C|1019
3T1Y|1|A|C|1020
3T1Y|1|A|C|1021

Current chains

Chain A

16S rRNA

Nearby chains