J3_3U5F_001

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_001 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.0685

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

3U5F|1|6|A|760
3U5F|1|6|G|761
3U5F|1|6|A|762
3U5F|1|6|G|763
*
3U5F|1|6|C|773
3U5F|1|6|A|774
3U5F|1|6|G|775
*
3U5F|1|6|U|785
3U5F|1|6|C|786
3U5F|1|6|G|787
3U5F|1|6|A|788
3U5F|1|6|A|789
3U5F|1|6|U|790

Current chains

Chain 6

18S rRNA

Nearby chains