J3_3U5F_008

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

3U5F|1|6|U|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_008 not in the Motif Atlas

Geometric match to J3_8P9A_080

Geometric discrepancy: 0.0583

The information below is about J3_8P9A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_99563.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

3U5F|1|6|U|1283
3U5F|1|6|C|1284
3U5F|1|6|U|1285
3U5F|1|6|U|1286
3U5F|1|6|A|1287
3U5F|1|6|G|1288
*
3U5F|1|6|C|1327
3U5F|1|6|G|1328
3U5F|1|6|A|1329
3U5F|1|6|G|1330
3U5F|1|6|A|1331
3U5F|1|6|C|1332
*
3U5F|1|6|G|1419
3U5F|1|6|C|1420
3U5F|1|6|A|1421
3U5F|1|6|A|1422
3U5F|1|6|U|1423
3U5F|1|6|A|1424

Current chains

Chain 6

18S rRNA

Nearby chains