J3_3U5F_009

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAC*GGAC*GUUU

Length

11 nucleotides

Bulged bases

3U5F|1|6|U|1413, 3U5F|1|6|U|1414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_009 not in the Motif Atlas

Geometric match to J3_8P9A_082

Geometric discrepancy: 0.0839

The information below is about J3_8P9A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.5

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3U5F|1|6|A|1336
3U5F|1|6|A|1337
3U5F|1|6|C|1338
*
3U5F|1|6|G|1386
3U5F|1|6|G|1387
3U5F|1|6|A|1388
3U5F|1|6|C|1389
*
3U5F|1|6|G|1412
3U5F|1|6|U|1413
3U5F|1|6|U|1414
3U5F|1|6|U|1415

Current chains

Chain 6

18S rRNA

Nearby chains