J3_4BPP_001
3D structure
- PDB id
- 4BPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAG*CAG*CCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4BPP_001 not in the Motif Atlas
- Geometric match to J3_8P9A_073
- Geometric discrepancy: 0.2263
- The information below is about J3_8P9A_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.1
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4BPP|1|A|A|744
4BPP|1|A|G|745
4BPP|1|A|A|746
4BPP|1|A|G|747
*
4BPP|1|A|C|757
4BPP|1|A|A|758
4BPP|1|A|G|759
*
4BPP|1|A|C|768
4BPP|1|A|C|769
4BPP|1|A|G|770
4BPP|1|A|A|771
4BPP|1|A|A|772
4BPP|1|A|U|773
Current chains
- Chain A
- 18S RRNA
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN RPS9E
- Chain P
- 40S RIBOSOMAL PROTEIN S24
- Chain W
- 40S RIBOSOMAL PROTEIN RPS4E
Coloring options: