J3_4BPP_005
3D structure
- PDB id
- 4BPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4BPP_005 not in the Motif Atlas
- Geometric match to J3_8CRE_079
- Geometric discrepancy: 0.1098
- The information below is about J3_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4BPP|1|A|U|1140
4BPP|1|A|G|1141
4BPP|1|A|G|1142
4BPP|1|A|A|1143
*
4BPP|1|A|U|1439
4BPP|1|A|A|1440
4BPP|1|A|C|1441
*
4BPP|1|A|G|1546
4BPP|1|A|G|1547
4BPP|1|A|A|1548
4BPP|1|A|A|1549
Current chains
- Chain A
- 18S RRNA
Nearby chains
- Chain G
- 40S RIBOSOMAL PROTEIN RPS5E
- Chain I
- 40S RIBOSOMAL PROTEIN RPS16E
- Chain M
- 40S RIBOSOMAL PROTEIN RPS18E
- Chain T
- 40S RIBOSOMAL PROTEIN RPS19E
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