J3_4BTS_008
3D structure
- PDB id
- 4BTS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 4BTS|1|AA|G|1171, 4BTS|1|AA|G|1173, 4BTS|1|AA|A|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4BTS_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1134
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4BTS|1|AA|C|1152
4BTS|1|AA|U|1153
4BTS|1|AA|U|1154
4BTS|1|AA|A|1155
4BTS|1|AA|A|1156
4BTS|1|AA|U|1157
4BTS|1|AA|U|1158
4BTS|1|AA|U|1159
*
4BTS|1|AA|G|1170
4BTS|1|AA|G|1171
4BTS|1|AA|G|1172
4BTS|1|AA|G|1173
4BTS|1|AA|A|1174
4BTS|1|AA|A|1175
4BTS|1|AA|A|1176
4BTS|1|AA|C|1177
4BTS|1|AA|U|1178
4BTS|1|AA|C|1179
4BTS|1|AA|A|1180
4BTS|1|AA|C|1181
*
4BTS|1|AA|G|1425
4BTS|1|AA|G|1426
4BTS|1|AA|C|1427
4BTS|1|AA|C|1428
4BTS|1|AA|G|1429
Current chains
- Chain AA
- 18S ribosomal RNA
Nearby chains
- Chain A9
- 40S RIBOSOMAL PROTEIN RPS31E
- Chain AJ
- 40S RIBOSOMAL PROTEIN RPS20E
- Chain AM
- 40S RIBOSOMAL PROTEIN RPS18E
- Chain AN
- 40S RIBOSOMAL PROTEIN RPS29E
- Chain AS
- 40S RIBOSOMAL PROTEIN RPS15E
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