J3_4D61_002
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUGG*UAAGA*UAA
- Length
- 12 nucleotides
- Bulged bases
- 4D61|1|1|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D61|1|1|U|681
4D61|1|1|U|682
4D61|1|1|G|683
4D61|1|1|G|684
*
4D61|1|1|U|918
4D61|1|1|A|919
4D61|1|1|A|920
4D61|1|1|G|921
4D61|1|1|A|922
*
4D61|1|1|U|1022
4D61|1|1|A|1023
4D61|1|1|A|1024
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain H
- 40S RIBOSOMAL PROTEIN S7
- Chain L
- 40S RIBOSOMAL PROTEIN S11
- Chain N
- 40S RIBOSOMAL PROTEIN S13
- Chain W
- 40S RIBOSOMAL PROTEIN S15A
- Chain X
- 40S RIBOSOMAL PROTEIN S23
- Chain b
- 40S RIBOSOMAL PROTEIN S27
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