J3_4D61_004
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4D61|1|1|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D61_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2329
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4D61|1|1|A|938
4D61|1|1|U|939
4D61|1|1|U|940
4D61|1|1|C|941
*
4D61|1|1|G|985
4D61|1|1|G|986
4D61|1|1|A|987
4D61|1|1|C|988
4D61|1|1|C|989
4D61|1|1|A|990
4D61|1|1|G|991
4D61|1|1|A|992
4D61|1|1|G|993
*
4D61|1|1|C|1000
4D61|1|1|A|1001
4D61|1|1|U|1002
4D61|1|1|U|1003
4D61|1|1|U|1004
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain B
- 40S RIBOSOMAL PROTEIN S3A
- Chain N
- 40S RIBOSOMAL PROTEIN S13
- Chain O
- 40S RIBOSOMAL PROTEIN S14
- Chain a
- 40S RIBOSOMAL PROTEIN S26
Coloring options: