J3_4D61_007
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 4D61|1|1|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D61|1|1|C|1237
4D61|1|1|U|1238
4D61|1|1|U|1239
4D61|1|1|A|1240
4D61|1|1|A|1241
4D61|1|1|U|1242
4D61|1|1|U|1243
4D61|1|1|U|1244
4D61|1|1|G|1245
*
4D61|1|1|C|1254
4D61|1|1|G|1255
4D61|1|1|G|1256
4D61|1|1|G|1257
4D61|1|1|A|1258
4D61|1|1|A|1259
4D61|1|1|A|1260
4D61|1|1|C|1261
4D61|1|1|C|1262
4D61|1|1|U|1263
4D61|1|1|C|1264
4D61|1|1|A|1265
4D61|1|1|C|1266
*
4D61|1|1|G|1516
4D61|1|1|G|1517
4D61|1|1|C|1518
4D61|1|1|U|1519
4D61|1|1|G|1520
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain P
- 40S RIBOSOMAL PROTEIN S15
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain S
- 40S RIBOSOMAL PROTEIN S18
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain d
- 40S RIBOSOMAL PROTEIN S29
- Chain h
- EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
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