J3_4D61_010

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UG*UGUCUG*CGAUAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D61|1|1|U|1350
4D61|1|1|G|1351
*
4D61|1|1|U|1360
4D61|1|1|G|1361
4D61|1|1|U|1362
4D61|1|1|C|1363
4D61|1|1|U|1364
4D61|1|1|G|1365
*
4D61|1|1|C|1374
4D61|1|1|G|1375
4D61|1|1|A|1376
4D61|1|1|U|1377
4D61|1|1|A|1378
4D61|1|1|A|1379

Current chains

Chain 1

18S RRNA

Nearby chains

Chain A

40S RIBOSOMAL PROTEIN SA

Chain C

40S RIBOSOMAL PROTEIN S2

Chain R

40S RIBOSOMAL PROTEIN S17

Chain a

40S RIBOSOMAL PROTEIN S26