3D structure

PDB id
4D61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
UG*UGUCUG*CGAUAA
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4D61|1|1|U|1350
4D61|1|1|G|1351
*
4D61|1|1|U|1360
4D61|1|1|G|1361
4D61|1|1|U|1362
4D61|1|1|C|1363
4D61|1|1|U|1364
4D61|1|1|G|1365
*
4D61|1|1|C|1374
4D61|1|1|G|1375
4D61|1|1|A|1376
4D61|1|1|U|1377
4D61|1|1|A|1378
4D61|1|1|A|1379

Current chains

Chain 1
18S RRNA

Nearby chains

Chain A
40S RIBOSOMAL PROTEIN SA
Chain C
40S RIBOSOMAL PROTEIN S2
Chain R
40S RIBOSOMAL PROTEIN S17
Chain a
40S RIBOSOMAL PROTEIN S26

Coloring options:

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