J3_4D61_011

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AGAGU*GCAG*CUGGAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D61|1|1|A|816
4D61|1|1|G|817
4D61|1|1|A|818
4D61|1|1|G|819
4D61|1|1|U|820
*
4D61|1|1|G|828
4D61|1|1|C|829
4D61|1|1|A|830
4D61|1|1|G|831
*
4D61|1|1|C|843
4D61|1|1|U|844
4D61|1|1|G|845
4D61|1|1|G|846
4D61|1|1|A|847
4D61|1|1|U|848

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain J

40S RIBOSOMAL PROTEIN S9

Chain Y

40S RIBOSOMAL PROTEIN S24