3D structure

PDB id
4DR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4DR1|1|A|A|975, 4DR1|1|A|G|976, 4DR1|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DR1_004 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.1067
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4DR1|1|A|U|955
4DR1|1|A|U|956
4DR1|1|A|U|957
4DR1|1|A|A|958
4DR1|1|A|A|959
4DR1|1|A|U|960
4DR1|1|A|U|961
4DR1|1|A|C|962
*
4DR1|1|A|G|973
4DR1|1|A|A|974
4DR1|1|A|A|975
4DR1|1|A|G|976
4DR1|1|A|A|977
4DR1|1|A|A|978
4DR1|1|A|C|979
4DR1|1|A|C|980
4DR1|1|A|U|981
4DR1|1|A|U|982
4DR1|1|A|A|983
4DR1|1|A|C|984
*
4DR1|1|A|G|1221
4DR1|1|A|G|1222
4DR1|1|A|C|1223
4DR1|1|A|G|1224
4DR1|1|A|A|1225

Current chains

Chain A
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19

Coloring options:


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