J3_4DR1_015

3D structure

PDB id

4DR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAAU*GUGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DR1|1|A|C|936
4DR1|1|A|A|937
4DR1|1|A|A|938
4DR1|1|A|G|939
*
4DR1|1|A|C|1344
4DR1|1|A|U|1345
4DR1|1|A|A|1346
4DR1|1|A|G|1347
4DR1|1|A|U|1348
4DR1|1|A|A|1349
4DR1|1|A|A|1350
4DR1|1|A|U|1351
*
4DR1|1|A|G|1371
4DR1|1|A|U|1372
4DR1|1|A|G|1373
4DR1|1|A|A|1374
4DR1|1|A|A|1375
4DR1|1|A|U|1376
4DR1|1|A|A|1377
4DR1|1|A|C|1378
4DR1|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain U

30S ribosomal protein THX