J3_4DR2_011
3D structure
- PDB id
- 4DR2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4DR2_011 not in the Motif Atlas
- Geometric match to J3_6CZR_016
- Geometric discrepancy: 0.1467
- The information below is about J3_6CZR_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.4
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4DR2|1|A|C|586
4DR2|1|A|G|587
4DR2|1|A|G|588
*
4DR2|1|A|C|651
4DR2|1|A|U|652
4DR2|1|A|A|653
4DR2|1|A|G|654
*
4DR2|1|A|C|754
4DR2|1|A|G|755
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
Coloring options: