J3_4DR4_014
3D structure
- PDB id
- 4DR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.97 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCUUC*GAGC
- Length
- 22 nucleotides
- Bulged bases
- 4DR4|1|A|C|48, 4DR4|1|A|A|50, 4DR4|1|A|A|51, 4DR4|1|A|U|368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4DR4|1|A|G|46
4DR4|1|A|C|47
4DR4|1|A|C|48
4DR4|1|A|U|49
4DR4|1|A|A|50
4DR4|1|A|A|51
4DR4|1|A|G|52
*
4DR4|1|A|U|359
4DR4|1|A|A|360
4DR4|1|A|G|361
4DR4|1|A|G|362
4DR4|1|A|A|363
4DR4|1|A|A|364
4DR4|1|A|U|365
4DR4|1|A|C|366
4DR4|1|A|U|367
4DR4|1|A|U|368
4DR4|1|A|C|369
*
4DR4|1|A|G|392
4DR4|1|A|A|393
4DR4|1|A|G|394
4DR4|1|A|C|395
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: