Loop J3_4DR4

3D structure

PDB id: 4DR4 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Experimental method: X-RAY DIFFRACTION
Resolution: 3.97 Å

Loop

Sequence: CUUGACAUGCUAGGGAACCCG*UGGGGUGCCCCGCGAGGGGAGCCCUAGCACAG*CUUACG
Length: 59 nucleotides
Bulged bases: 4DR4|1|A|G|1024, 4DR4|1|A|U|1025, 4DR4|1|A|G|1026, 4DR4|1|A|C|1027, 4DR4|1|A|C|1214
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4DR4|1|A|C|990
4DR4|1|A|U|991
4DR4|1|A|U|992
4DR4|1|A|G|993
4DR4|1|A|A|994
4DR4|1|A|C|995
4DR4|1|A|A|996
4DR4|1|A|U|997
4DR4|1|A|G|998
4DR4|1|A|C|999
4DR4|1|A|U|1000
4DR4|1|A|A|1001
4DR4|1|A|G|1002
4DR4|1|A|G|1003
4DR4|1|A|G|1003|||A
4DR4|1|A|A|1004
4DR4|1|A|A|1005
4DR4|1|A|C|1006
4DR4|1|A|C|1007
4DR4|1|A|C|1008
4DR4|1|A|G|1009
*
4DR4|1|A|U|1020
4DR4|1|A|G|1021
4DR4|1|A|G|1022
4DR4|1|A|G|1023
4DR4|1|A|G|1024
4DR4|1|A|U|1025
4DR4|1|A|G|1026
4DR4|1|A|C|1027
4DR4|1|A|C|1028
4DR4|1|A|C|1029
4DR4|1|A|C|1030
4DR4|1|A|G|1030|||A
4DR4|1|A|C|1030|||B
4DR4|1|A|G|1030|||C
4DR4|1|A|A|1030|||D
4DR4|1|A|G|1031
4DR4|1|A|G|1032
4DR4|1|A|G|1033
4DR4|1|A|G|1034
4DR4|1|A|A|1035
4DR4|1|A|G|1036
4DR4|1|A|C|1037
4DR4|1|A|C|1038
4DR4|1|A|C|1039
4DR4|1|A|U|1040
4DR4|1|A|A|1041
4DR4|1|A|G|1042
4DR4|1|A|C|1043
4DR4|1|A|A|1044
4DR4|1|A|C|1045
4DR4|1|A|A|1046
4DR4|1|A|G|1047
*
4DR4|1|A|C|1210
4DR4|1|A|U|1211
4DR4|1|A|U|1212
4DR4|1|A|A|1213
4DR4|1|A|C|1214
4DR4|1|A|G|1215

Current chains

Chain A: 16S rRNA

Nearby chains

Chain N: 30S ribosomal protein S14

J3_4DR4_016