J3_4DR7_004

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

4DR7|1|A|A|975, 4DR7|1|A|G|976, 4DR7|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DR7_004 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0813

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4DR7|1|A|U|955
4DR7|1|A|U|956
4DR7|1|A|U|957
4DR7|1|A|A|958
4DR7|1|A|A|959
4DR7|1|A|U|960
4DR7|1|A|U|961
4DR7|1|A|C|962
*
4DR7|1|A|G|973
4DR7|1|A|A|974
4DR7|1|A|A|975
4DR7|1|A|G|976
4DR7|1|A|A|977
4DR7|1|A|A|978
4DR7|1|A|C|979
4DR7|1|A|C|980
4DR7|1|A|U|981
4DR7|1|A|U|982
4DR7|1|A|A|983
4DR7|1|A|C|984
*
4DR7|1|A|G|1221
4DR7|1|A|G|1222
4DR7|1|A|C|1223
4DR7|1|A|G|1224
4DR7|1|A|A|1225

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19