J3_4DR7_018

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CGC*GGACUGCC*GGAGGAAGGAG

Length

22 nucleotides

Bulged bases

4DR7|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DR7|1|A|C|1116
4DR7|1|A|G|1117
4DR7|1|A|C|1118
*
4DR7|1|A|G|1155
4DR7|1|A|G|1156
4DR7|1|A|A|1157
4DR7|1|A|C|1158
4DR7|1|A|U|1159
4DR7|1|A|G|1160
4DR7|1|A|C|1161
4DR7|1|A|C|1162
*
4DR7|1|A|G|1174
4DR7|1|A|G|1175
4DR7|1|A|A|1176
4DR7|1|A|G|1177
4DR7|1|A|G|1178
4DR7|1|A|A|1179
4DR7|1|A|A|1180
4DR7|1|A|G|1181
4DR7|1|A|G|1182
4DR7|1|A|A|1183
4DR7|1|A|G|1184

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain N

30S ribosomal protein S14