3D structure

PDB id
4DV1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4DV1|1|A|A|975, 4DV1|1|A|G|976, 4DV1|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DV1_004 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.1374
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4DV1|1|A|U|955
4DV1|1|A|U|956
4DV1|1|A|U|957
4DV1|1|A|A|958
4DV1|1|A|A|959
4DV1|1|A|U|960
4DV1|1|A|U|961
4DV1|1|A|C|962
*
4DV1|1|A|G|973
4DV1|1|A|A|974
4DV1|1|A|A|975
4DV1|1|A|G|976
4DV1|1|A|A|977
4DV1|1|A|A|978
4DV1|1|A|C|979
4DV1|1|A|C|980
4DV1|1|A|U|981
4DV1|1|A|U|982
4DV1|1|A|A|983
4DV1|1|A|C|984
*
4DV1|1|A|G|1221
4DV1|1|A|G|1222
4DV1|1|A|C|1223
4DV1|1|A|G|1224
4DV1|1|A|A|1225

Current chains

Chain A
16S rRNA

Nearby chains

Chain J
ribosomal protein S10
Chain M
ribosomal protein S13
Chain N
ribosomal protein S14
Chain S
ribosomal protein S19

Coloring options:


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