3D structure

PDB id
4DV1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
CGG*CUAG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DV1_010 not in the Motif Atlas
Geometric match to J3_6CZR_016
Geometric discrepancy: 0.1557
The information below is about J3_6CZR_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.4
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
6

Unit IDs

4DV1|1|A|C|586
4DV1|1|A|G|587
4DV1|1|A|G|588
*
4DV1|1|A|C|651
4DV1|1|A|U|652
4DV1|1|A|A|653
4DV1|1|A|G|654
*
4DV1|1|A|C|754
4DV1|1|A|G|755

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
ribosomal protein S8
Chain L
ribosomal protein S12
Chain O
ribosomal protein S15
Chain Q
ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1938 s
Application loaded.