J3_4DV1_016
3D structure
- PDB id
- 4DV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.85 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACCAGG*CCUGGGCGA
- Length
- 33 nucleotides
- Bulged bases
- 4DV1|1|A|A|975, 4DV1|1|A|G|976, 4DV1|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4DV1|1|A|U|955
4DV1|1|A|U|956
4DV1|1|A|U|957
4DV1|1|A|A|958
4DV1|1|A|A|959
4DV1|1|A|U|960
4DV1|1|A|U|961
4DV1|1|A|C|962
*
4DV1|1|A|G|973
4DV1|1|A|A|974
4DV1|1|A|A|975
4DV1|1|A|G|976
4DV1|1|A|A|977
4DV1|1|A|A|978
4DV1|1|A|C|979
4DV1|1|A|C|980
4DV1|1|A|U|981
4DV1|1|A|U|982
4DV1|1|A|A|983
4DV1|1|A|C|984
4DV1|1|A|C|985
4DV1|1|A|A|986
4DV1|1|A|G|987
4DV1|1|A|G|988
*
4DV1|1|A|C|1217
4DV1|1|A|C|1218
4DV1|1|A|U|1219
4DV1|1|A|G|1220
4DV1|1|A|G|1221
4DV1|1|A|G|1222
4DV1|1|A|C|1223
4DV1|1|A|G|1224
4DV1|1|A|A|1225
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- ribosomal protein S10
- Chain M
- ribosomal protein S13
- Chain N
- ribosomal protein S14
- Chain S
- ribosomal protein S19
Coloring options: