J3_4DV1_017

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CUUGACAUGC*GCACAGGUG*CCCUUACG

Length

27 nucleotides

Bulged bases

4DV1|1|A|U|1049, 4DV1|1|A|U|1212, 4DV1|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV1|1|A|C|990
4DV1|1|A|U|991
4DV1|1|A|U|992
4DV1|1|A|G|993
4DV1|1|A|A|994
4DV1|1|A|C|995
4DV1|1|A|A|996
4DV1|1|A|U|997
4DV1|1|A|G|998
4DV1|1|A|C|999
*
4DV1|1|A|G|1042
4DV1|1|A|C|1043
4DV1|1|A|A|1044
4DV1|1|A|C|1045
4DV1|1|A|A|1046
4DV1|1|A|G|1047
4DV1|1|A|G|1048
4DV1|1|A|U|1049
4DV1|1|A|G|1050
*
4DV1|1|A|C|1208
4DV1|1|A|C|1209
4DV1|1|A|C|1210
4DV1|1|A|U|1211
4DV1|1|A|U|1212
4DV1|1|A|A|1213
4DV1|1|A|C|1214
4DV1|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

ribosomal protein S14