J3_4DV1_019

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CGC*GGACUGCC*GGAGGAAGGAG

Length

22 nucleotides

Bulged bases

4DV1|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV1|1|A|C|1116
4DV1|1|A|G|1117
4DV1|1|A|C|1118
*
4DV1|1|A|G|1155
4DV1|1|A|G|1156
4DV1|1|A|A|1157
4DV1|1|A|C|1158
4DV1|1|A|U|1159
4DV1|1|A|G|1160
4DV1|1|A|C|1161
4DV1|1|A|C|1162
*
4DV1|1|A|G|1174
4DV1|1|A|G|1175
4DV1|1|A|A|1176
4DV1|1|A|G|1177
4DV1|1|A|G|1178
4DV1|1|A|A|1179
4DV1|1|A|A|1180
4DV1|1|A|G|1181
4DV1|1|A|G|1182
4DV1|1|A|A|1183
4DV1|1|A|G|1184

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain G

ribosomal protein S7

Chain I

ribosomal protein S9

Chain N

ribosomal protein S14