J3_4DV4_017

3D structure

PDB id

4DV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UGCUAGGGAACCCGGG*CCUGGGGUGC*GAGCCCUAGCA

Length

37 nucleotides

Bulged bases

4DV4|1|A|A|1004, 4DV4|1|A|G|1023, 4DV4|1|A|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV4|1|A|U|997
4DV4|1|A|G|998
4DV4|1|A|C|999
4DV4|1|A|U|1000
4DV4|1|A|A|1001
4DV4|1|A|G|1002
4DV4|1|A|G|1003
4DV4|1|A|G|1003|||A
4DV4|1|A|A|1004
4DV4|1|A|A|1005
4DV4|1|A|C|1006
4DV4|1|A|C|1007
4DV4|1|A|C|1008
4DV4|1|A|G|1009
4DV4|1|A|G|1010
4DV4|1|A|G|1011
*
4DV4|1|A|C|1018
4DV4|1|A|C|1019
4DV4|1|A|U|1020
4DV4|1|A|G|1021
4DV4|1|A|G|1022
4DV4|1|A|G|1023
4DV4|1|A|G|1024
4DV4|1|A|U|1025
4DV4|1|A|G|1026
4DV4|1|A|C|1027
*
4DV4|1|A|G|1034
4DV4|1|A|A|1035
4DV4|1|A|G|1036
4DV4|1|A|C|1037
4DV4|1|A|C|1038
4DV4|1|A|C|1039
4DV4|1|A|U|1040
4DV4|1|A|A|1041
4DV4|1|A|G|1042
4DV4|1|A|C|1043
4DV4|1|A|A|1044

Current chains

Chain A

16S rRNA

Nearby chains